background,feature,family,clock_with_feature,clock_without_feature,nonclock_with_feature,nonclock_without_feature,clock_n,nonclock_n,clock_fraction,nonclock_fraction,difference_percentage_points,sample_odds_ratio,conditional_odds_ratio,ci95_low,ci95_high,p_fisher_two_sided,q_bh_all_72,q_bh_primary_24
450K_all_CpGs,Island,island_context,135,218,150118,331950,353,482068,0.38243626062322944,0.3114042002373109,7.1032060385918525,1.3693585510896567,1.3693576108948993,1.096422480384816,1.7051601552779698,0.004781965227066375,0.012387081774629407,0.00882824349612254
450K_all_CpGs,Shore,island_context,147,206,111842,370226,353,482068,0.4164305949008499,0.23200461345702267,18.44259814438272,2.3621751940974987,2.362170127208782,1.8982728500746793,2.9334150455986103,2.0919871186987047e-14,1.5062307254630672e-13,1.0041538169753782e-13
450K_all_CpGs,Shelf,island_context,6,347,47056,435012,353,482068,0.0169971671388102,0.09761278491831028,-8.061561777950008,0.15984829406767287,0.15984859751495203,0.058256287648670135,0.3515011047876917,1.524928304715401e-09,7.319655862633925e-09,5.228325616167089e-09
450K_all_CpGs,OpenSea,island_context,65,288,173052,309016,353,482068,0.18413597733711048,0.35897840138735615,-17.484242405024567,0.4030187137071195,0.4030193486591091,0.3030201166041182,0.5291593923844568,6.648919489654323e-13,4.3520200295919206e-12,2.6595677958617294e-12
450K_all_CpGs,TSS200,gene_region,53,300,62572,419496,353,482068,0.1501416430594901,0.12979911547748452,2.0342527582005583,1.1844109186217477,1.1844104764300478,0.8670660673058386,1.5906803135611336,0.2668409440910447,0.4102380352829651,0.33706224516763544
450K_all_CpGs,TSS1500,gene_region,165,188,84170,397898,353,482068,0.46742209631728043,0.17460192338010405,29.282017293717637,4.14897219153739,4.14895472644683,3.3451124876865688,5.1419564287700394,9.763821073351627e-37,1.757487793203293e-35,1.1716585288021954e-35
450K_all_CpGs,5'UTR,gene_region,89,264,65387,416681,353,482068,0.2521246458923513,0.13563854062082528,11.6486105271526,2.148317001665144,2.148312579174991,1.6698546945017094,2.7420014275172835,5.24957683423107e-09,2.099830733692428e-08,1.5748730502693213e-08
450K_all_CpGs,1stExon,gene_region,80,273,39291,442777,353,482068,0.22662889518413598,0.08150509886572019,14.51237963184158,3.3023211888600907,3.3023079318047968,2.5404024366767235,4.252319508457493,5.414986078071126e-17,4.331988862456901e-16,3.2489916468426756e-16
450K_all_CpGs,Body,gene_region,80,273,174358,307710,353,482068,0.22662889518413598,0.36168756275048336,-13.505866756634738,0.5171625538915827,0.5171631811499742,0.39790250995999177,0.6658361152710092,6.191340427181768e-08,2.3461921618794068e-07,1.6510241139151382e-07
450K_all_CpGs,3'UTR,gene_region,2,351,19692,462376,353,482068,0.0056657223796034,0.04084900885352274,-3.5183286473919337,0.13379144234313847,0.13379169155486634,0.016138234723541776,0.4869785620290409,0.00011805389903993758,0.00036956003177719595,0.0002575721433598638
450K_all_CpGs,Promoter_TSS200_or_TSS1500,gene_region,214,139,139782,342286,353,482068,0.6062322946175638,0.28996324170034105,31.626905291722274,3.769961015348772,3.7699490126179294,3.0306868198863697,4.702005026054748,1.1519088476279722e-34,1.65874874058428e-33,9.215270781023778e-34
450K_all_CpGs,No_gene_region_annotation,gene_region,3,350,117775,364293,353,482068,0.0084985835694051,0.24431200577511886,-23.581342220571376,0.026512514783030596,0.026512585032860057,0.005441161334612174,0.07812418761734354,6.540739583674204e-38,1.569777500081809e-36,1.569777500081809e-36
27K_shared_CpGs,Island,island_context,135,218,10916,14709,353,25625,0.38243626062322944,0.425990243902439,-4.355398327920956,0.8344434228352624,0.8344491468783326,0.6672046791895136,1.0405551401575759,0.10406958574381431,0.17840500413225308,0.13875944765841908
27K_shared_CpGs,Shore,island_context,147,206,8125,17500,353,25625,0.4164305949008499,0.3170731707317073,9.935742416914255,1.5369678864824496,1.5369407844665217,1.2331520823951414,1.9117002528862606,0.00010983106136467521,0.0003594471099207552,0.0002575721433598638
27K_shared_CpGs,Shelf,island_context,6,347,563,25062,353,25625,0.0169971671388102,0.021970731707317073,-0.4973564568506873,0.7697135047425023,0.7697203834936865,0.2793312754190296,1.7031124810172047,0.71254837813728,0.8713459173318759,0.8036932681261255
27K_shared_CpGs,OpenSea,island_context,65,288,6021,19604,353,25625,0.18413597733711048,0.2349658536585366,-5.08298763214261,0.7348470169222536,0.7348550336327181,0.5516849561178971,0.9664414960740344,0.026596246338240696,0.05319249267648139,0.04255399414118512
27K_shared_CpGs,TSS200,gene_region,53,300,4322,21303,353,25625,0.1501416430594901,0.16866341463414633,-1.8521771574656232,0.8707843590930124,0.8707887923365759,0.6363700775282095,1.1717263736585553,0.39030366076228495,0.5620372714976903,0.4683643929147419
27K_shared_CpGs,TSS1500,gene_region,165,188,9894,15731,353,25625,0.46742209631728043,0.38610731707317075,8.131477924410968,1.395437918532186,1.395419503404946,1.1234485097097382,1.7318987787109326,0.00204572683889276,0.005665089707703027,0.00409145367778552
27K_shared_CpGs,5'UTR,gene_region,89,264,7850,17775,353,25625,0.2521246458923513,0.30634146341463414,-5.421681752228285,0.763354082223509,0.7633615910006102,0.5925463853013003,0.9757199383277224,0.031194257201682014,0.06070233833840825,0.046791385802523025
27K_shared_CpGs,1stExon,gene_region,80,273,6922,18703,353,25625,0.22662889518413598,0.2701268292682927,-4.349793408415669,0.7917845421457095,0.791791276742214,0.608295028094309,1.0210352038528303,0.07001605174577175,0.12602889314238913,0.09884619069991304
27K_shared_CpGs,Body,gene_region,80,273,5620,20005,353,25625,0.22662889518413598,0.2193170731707317,0.7311822013404273,1.04310872994147,1.0431070157413704,0.8011804724031816,1.3454518995790032,0.7461667853459044,0.875990688458737,0.8036932681261255
27K_shared_CpGs,3'UTR,gene_region,2,351,173,25452,353,25625,0.0056657223796034,0.0067512195121951215,-0.10854971325917218,0.8382985030383874,0.8383037381494051,0.10032384909190878,3.097043480875266,1.0,1.0,1.0
27K_shared_CpGs,Promoter_TSS200_or_TSS1500,gene_region,214,139,13762,11863,353,25625,0.6062322946175638,0.5370536585365854,6.917863608097841,1.3271253655410216,1.3271111434833556,1.0653839913948415,1.6574800945723422,0.009846758586606302,0.02286989091082754,0.016880157577039374
27K_shared_CpGs,No_gene_region_annotation,gene_region,3,350,213,25412,353,25625,0.0084985835694051,0.00831219512195122,0.018638844745388038,1.02261569416499,1.0226148043388064,0.20821767655416037,3.054042320990147,0.7702060486208703,0.875990688458737,0.8036932681261255
450K_all_CpGs_type_I,Island,island_context,19,3,77655,57799,22,135454,0.8636363636363636,0.5732942548761941,29.034210876016953,4.713931277230485,4.71388997651789,1.3875195564702818,24.872999968896572,0.004817198467911436,0.012387081774629407,
450K_all_CpGs_type_I,Shore,island_context,2,20,22369,113085,22,135454,0.09090909090909091,0.1651409334534233,-7.423184254433238,0.5055433859358934,0.5055453952361436,0.05728734523124132,2.081354129452464,0.5640064253891421,0.7251511183574685,
450K_all_CpGs_type_I,Shelf,island_context,0,22,6913,128541,22,135454,0.0,0.051035775982990535,-5.103577598299053,0.0,0.0,0.0,3.3952885613975647,0.6262473495237904,0.7910492836089984,
450K_all_CpGs_type_I,OpenSea,island_context,1,21,28517,106937,22,135454,0.045454545454545456,0.21052903568739204,-16.50744902328466,0.17856850633790705,0.17856981559218196,0.004317799827050737,1.1103966187144092,0.06548424149105461,0.12089398429117776,
450K_all_CpGs_type_I,TSS200,gene_region,2,20,30637,104817,22,135454,0.09090909090909091,0.22618010542324332,-13.527101451415241,0.34212553448444694,0.3421274864318791,0.03876973915866207,1.408520456245573,0.19921536377640467,0.3187445820422475,
450K_all_CpGs_type_I,TSS1500,gene_region,9,13,22528,112926,22,135454,0.4090909090909091,0.16631476368361214,24.277614540729697,3.4703275240384617,3.470282677778069,1.309041201283538,8.776704418937605,0.006049242985323623,0.01501881017045865,
450K_all_CpGs_type_I,5'UTR,gene_region,4,18,23265,112189,22,135454,0.18181818181818182,0.1717557251908397,1.006245662734212,1.0716049382716049,1.071604378696189,0.26377372475631666,3.2535213971880252,0.7825879634439132,0.875990688458737,
450K_all_CpGs_type_I,1stExon,gene_region,11,11,18169,117285,22,135454,0.5,0.13413409718428396,36.58659028157161,6.45522593428367,6.455075864367987,2.5375081230643115,16.420836155176985,4.256916020772044e-05,0.00014595140642647007,
450K_all_CpGs_type_I,Body,gene_region,5,17,42642,92812,22,135454,0.22727272727272727,0.3148079790925333,-8.753525181980601,0.6401586946865421,0.6401606123419509,0.18464885740863085,1.807793507751048,0.4934206807085123,0.6831978655964016,
450K_all_CpGs_type_I,3'UTR,gene_region,0,22,3233,132221,22,135454,0.0,0.02386788134717321,-2.386788134717321,0.0,0.0,0.0,7.4698519215827845,1.0,1.0,
450K_all_CpGs_type_I,Promoter_TSS200_or_TSS1500,gene_region,11,11,49717,85737,22,135454,0.5,0.36703973304590487,13.296026695409513,1.724500673813786,1.7244933887727165,0.6779577623452949,4.3865231993149365,0.26779427303193554,0.4102380352829651,
450K_all_CpGs_type_I,No_gene_region_annotation,gene_region,0,22,27837,107617,22,135454,0.0,0.20550888124381708,-20.550888124381707,0.0,0.0,0.0,0.7058057610152744,0.013829353966443246,0.030173135926785263,
450K_all_CpGs_type_II,Island,island_context,116,215,72463,274151,331,346614,0.3504531722054381,0.20905964560000462,14.139352660543347,2.0412352222096346,2.041230193127692,1.6141271976859644,2.570519342468296,2.7524533526313134e-09,1.2221566341842752e-08,
450K_all_CpGs_type_II,Shore,island_context,145,186,89473,257141,331,346614,0.4380664652567976,0.2581344088813493,17.99320563754483,2.2404455167528763,2.240439450866418,1.7903280542127906,2.799223365521065,1.4805251104446145e-12,8.883150662667687e-12,
450K_all_CpGs_type_II,Shelf,island_context,6,325,40143,306471,331,346614,0.01812688821752266,0.1158147103117589,-9.768782209423623,0.14094427805211754,0.14094466590918364,0.05134247374644785,0.3101495133153732,4.022574240462806e-11,2.0687524665237287e-10,
450K_all_CpGs_type_II,OpenSea,island_context,64,267,144535,202079,331,346614,0.1933534743202417,0.4169912352068872,-22.36377608866455,0.3351327497493253,0.33513363863631507,0.25099367049763127,0.44175967148570544,9.017474214720625e-18,8.115726793248563e-17,
450K_all_CpGs_type_II,TSS200,gene_region,51,280,31935,314679,331,346614,0.1540785498489426,0.09213418961726878,6.1944360231673805,1.794787291149433,1.7947834621566428,1.30438542422159,2.4265720152056933,0.0002777706663255388,0.0008333119989766164,
450K_all_CpGs_type_II,TSS1500,gene_region,156,175,61642,284972,331,346614,0.47129909365558914,0.17784047961132557,29.345861404426355,4.121089238784317,4.121065414573166,3.2990036811174246,5.14419933001845,2.1311937951201893e-34,2.557432554144227e-33,
450K_all_CpGs_type_II,5'UTR,gene_region,85,246,42122,304492,331,346614,0.256797583081571,0.12152423156594944,13.52733515156216,2.4977600875196826,2.4977509719869744,1.9279496288982914,3.209435356822645,1.8093142153230643e-11,1.002081719255851e-10,
450K_all_CpGs_type_II,1stExon,gene_region,69,262,21122,325492,331,346614,0.2084592145015106,0.06093810405811652,14.752111044339406,4.0583834661736145,4.0583533647229615,3.065385459374031,5.311546868071829,2.9461092572821964e-19,3.030283807490259e-18,
450K_all_CpGs_type_II,Body,gene_region,75,256,131716,214898,331,346614,0.22658610271903323,0.3800077319438915,-15.342162922485825,0.477985957951198,0.47798685531650287,0.3644393981838365,0.6205900323491497,2.8856476084906495e-09,1.2221566341842752e-08,
450K_all_CpGs_type_II,3'UTR,gene_region,2,329,16459,330155,331,346614,0.006042296072507553,0.047485098697686766,-4.144280262517921,0.12194065718426057,0.1219409794838068,0.014704712697123413,0.44407733988031045,2.580596909925626e-05,9.290148875732253e-05,
450K_all_CpGs_type_II,Promoter_TSS200_or_TSS1500,gene_region,203,128,90065,256549,331,346614,0.6132930513595166,0.259842360666332,35.34506906931846,4.517522674596125,4.517498750593237,3.6027525688215283,5.6818037635483325,2.0601188638961364e-41,1.4832855820052185e-39,
450K_all_CpGs_type_II,No_gene_region_annotation,gene_region,3,328,89938,256676,331,346614,0.00906344410876133,0.25947595884759417,-25.041251473883285,0.026102941375874655,0.026103039513487077,0.0053553518512981626,0.07696068286794844,3.258296401757571e-38,1.1729867046327256e-36,
27K_shared_CpGs_type_I,Island,island_context,19,3,2071,222,22,2293,0.8636363636363636,0.9031836022677715,-3.9547238631407855,0.6788990825688074,0.6790313000194546,0.19760089904378766,3.6105999856223163,0.46679586185631483,0.6590059226206797,
27K_shared_CpGs_type_I,Shore,island_context,2,20,133,2160,22,2293,0.09090909090909091,0.05800261665939817,3.2906474249692743,1.6240601503759398,1.6236397013190276,0.18212362489163675,6.799971036473506,0.3704936221192986,0.5443987916855,
27K_shared_CpGs_type_I,Shelf,island_context,0,22,6,2287,22,2293,0.0,0.0026166593981683385,-0.26166593981683384,0.0,0.0,0.0,93.25478785410475,1.0,1.0,
27K_shared_CpGs_type_I,OpenSea,island_context,1,21,83,2210,22,2293,0.045454545454545456,0.03619712167466201,0.9257423779883444,1.267928858290304,1.2677838594834931,0.030299196463434812,8.07764643649318,0.5581990556154353,0.7251511183574685,
27K_shared_CpGs_type_I,TSS200,gene_region,2,20,387,1906,22,2293,0.09090909090909091,0.16877453118185784,-7.786544027276693,0.49250645994832043,0.49262500655315444,0.055603890611839034,2.041542013673304,0.5638705756010389,0.7251511183574685,
27K_shared_CpGs_type_I,TSS1500,gene_region,9,13,451,1842,22,2293,0.4090909090909091,0.1966855647623201,21.2405344328589,2.827562681221218,2.8259293123593303,1.0590617078503315,7.197343107750165,0.026291803321279367,0.05319249267648139,
27K_shared_CpGs_type_I,5'UTR,gene_region,4,18,1060,1233,22,2293,0.18181818181818182,0.46227649367640644,-28.04583118582246,0.25849056603773585,0.25861704006111924,0.06346653411114452,0.7884171884667204,0.009060383475476856,0.021744920341144454,
27K_shared_CpGs_type_I,1stExon,gene_region,11,11,1091,1202,22,2293,0.5,0.4757959005669429,2.4204099433057125,1.1017415215398716,1.1016953390072792,0.43123577347204173,2.8145476648312098,0.8337851123402764,0.9095837589166652,
27K_shared_CpGs_type_I,Body,gene_region,5,17,468,1825,22,2293,0.22727272727272727,0.2040994330571304,2.317329421559686,1.1469331322272498,1.1468625113039328,0.3291009373740274,3.260146707353364,0.7908249270808042,0.875990688458737,
27K_shared_CpGs_type_I,3'UTR,gene_region,0,22,14,2279,22,2293,0.0,0.006105538595726123,-0.6105538595726123,0.0,0.0,0.0,33.53434190804005,1.0,1.0,
27K_shared_CpGs_type_I,Promoter_TSS200_or_TSS1500,gene_region,11,11,797,1496,22,2293,0.5,0.3475795900566943,15.24204099433057,1.877038895859473,1.8764945208440054,0.7341929134084174,4.796088516777893,0.17603635468855913,0.29475854738549434,
27K_shared_CpGs_type_I,No_gene_region_annotation,gene_region,0,22,4,2289,22,2293,0.0,0.0017444395987788923,-0.17444395987788924,0.0,0.0,0.0,164.56326696141184,1.0,1.0,
27K_shared_CpGs_type_II,Island,island_context,116,215,8845,14487,331,23332,0.3504531722054381,0.37909309103377337,-2.8639918828335276,0.8836904308044224,0.8836949768159204,0.6977842210736925,1.114498426797654,0.30452319595121125,0.45678479392681687,
27K_shared_CpGs_type_II,Shore,island_context,145,186,7992,15340,331,23332,0.4380664652567976,0.3425338590776616,9.553260617913601,1.496321590407612,1.49629480110317,1.1937612695444104,1.8725360522205778,0.0003661079014385753,0.001054390756143097,
27K_shared_CpGs_type_II,Shelf,island_context,6,325,557,22775,331,23332,0.01812688821752266,0.0238727927310132,-0.5745904513490542,0.7548681121392072,0.7548760041526882,0.27380307093084616,1.6715326501810956,0.7140195711469539,0.8713459173318759,
27K_shared_CpGs_type_II,OpenSea,island_context,64,267,5938,17394,331,23332,0.1933534743202417,0.25450025715755187,-6.114678283731018,0.7021469037734492,0.7021564907048325,0.5250638013347667,0.9270979721323853,0.010829999296421072,0.024367498416947412,
27K_shared_CpGs_type_II,TSS200,gene_region,51,280,3935,19397,331,23332,0.1540785498489426,0.16865249442825303,-1.4573944579310438,0.89784625158831,0.8978501994555076,0.6513713885285565,1.2162878444268643,0.5538724994911632,0.7251511183574685,
27K_shared_CpGs_type_II,TSS1500,gene_region,156,175,9443,13889,331,23332,0.47129909365558914,0.40472312703583063,6.657596661975851,1.3111353837309572,1.31112007963275,1.0480422756819399,1.639048330611164,0.015315972445656686,0.0324338240025671,
27K_shared_CpGs_type_II,5'UTR,gene_region,85,246,6790,16542,331,23332,0.256797583081571,0.29101662952168694,-3.421904644011592,0.8417867021085528,0.8417926082386356,0.6488231056588352,1.0832980332218816,0.18022987231045864,0.2949216092352959,
27K_shared_CpGs_type_II,1stExon,gene_region,69,262,5831,17501,331,23332,0.2084592145015106,0.24991428081604664,-4.145506631453605,0.7904376581603197,0.7904450576645803,0.5962600655790425,1.0359985836261143,0.08437831281772565,0.14817654933844504,
27K_shared_CpGs_type_II,Body,gene_region,75,256,5152,18180,331,23332,0.22658610271903323,0.22081261786387793,0.5773484855155303,1.033806652756211,1.0338051871087337,0.7868005374848217,1.3448296630822876,0.7897577081200094,0.875990688458737,
27K_shared_CpGs_type_II,3'UTR,gene_region,2,329,159,23173,331,23332,0.006042296072507553,0.0068146751242928166,-0.07723790517852637,0.8859704459865038,0.8859747254480752,0.10592744802621609,3.2790863184786243,1.0,1.0,
27K_shared_CpGs_type_II,Promoter_TSS200_or_TSS1500,gene_region,203,128,12965,10367,331,23332,0.6132930513595166,0.555674609977713,5.761844138180361,1.2681383773621289,1.2681258640089368,1.0098686840806848,1.597235807251691,0.039152372475002195,0.07418344258421468,
27K_shared_CpGs_type_II,No_gene_region_annotation,gene_region,3,328,209,23123,331,23332,0.00906344410876133,0.008957654723127036,0.010578938563429383,1.0119179600886918,1.011917450568219,0.20594159255776773,3.0245307525271827,0.7724596588811627,0.875990688458737,
